tooluniverse

1000+ scientific tools for AI scientists: life science, reserach, literature, and more.

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Package Details

tooluniverse

1.0.20•https://pypi.org/project/tooluniverse

Transportstdio

Runtimeuvx

Package Arguments

Positional

Position 0

tooluniverse-smcp-stdio

Position 1

--compact-modeCompact mode enabled by default: only exposes 4 core tools (tool finder, tool executor, etc.) to prevent context window overflow. All 1000+ tools remain accessible via the execute_tool function.

Named

--categories

Specific tool categories to load (e.g., uniprot ChEMBL opentarget pubmed). Omit to load all tools. See full list: https://zitniklab.hms.harvard.edu/ToolUniverse/tools/tools_config_index.html

Environment Variables

OPENAI_API_KEY

Secret

OpenAI API key for LLM-based tool finding and embedding features

ANTHROPIC_API_KEY

Secret

Anthropic API key for Claude-based features

GEMINI_API_KEY

Secret

Google Gemini API key for Gemini-based features

OPENROUTER_API_KEY

Secret

OpenRouter API key for accessing 100+ LLM models

AZURE_OPENAI_API_KEY

Secret

Azure OpenAI API key (alternative to OpenAI)

HF_TOKEN

Secret

HuggingFace token for accessing models and datasets

NCBI_API_KEY

Secret

NCBI/PubMed API key for higher rate limits (10 req/sec vs 3 req/sec). Register at https://www.ncbi.nlm.nih.gov/account/

SEMANTIC_SCHOLAR_API_KEY

Secret

Semantic Scholar API key for higher rate limits (100 req/sec vs 1 req/sec). Register at https://www.semanticscholar.org/product/api

BIOGRID_API_KEY

Secret

BioGRID API key for protein-protein interaction queries. Register free at https://webservice.thebiogrid.org/

DISGENET_API_KEY

Secret

DisGeNET API key for gene-disease association data. Register free at https://www.disgenet.org/

OMIM_API_KEY

Secret

OMIM API key for Mendelian disease data. Register at https://omim.org/api

ONCOKB_API_TOKEN

Secret

OncoKB API token for precision oncology annotations. Register at https://www.oncokb.org/apiAccess

NVIDIA_API_KEY

Secret

NVIDIA NIM API key for AlphaFold2 structure prediction, molecular docking, and genomics tools. Get key at https://build.nvidia.com

USPTO_API_KEY

Secret

USPTO API key for patent data access. Register at https://developer.uspto.gov/

UMLS_API_KEY

Secret

UMLS API key for medical terminology and concept mapping. Register at https://uts.nlm.nih.gov/uts/